population genetics of plant pathogenic fungi Search Results


fungal diseases of plants  (PopulationGenetics)
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plant population genetics breeding & genetic resources  (PopulationGenetics)
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population genetics of plant pathogen fungi  (PopulationGenetics)
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PopulationGenetics population genetics of plant pathogen fungi
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population genetics and origin of the native north american agricultural weed waterhemp  (PopulationGenetics)
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arabidopsis cebennensis  (Schmid GmbH)
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Schmid GmbH arabidopsis cebennensis
Summary of evidence for evolutionary origins of <t>Arabidopsis</t> thaliana lineage-specific genes . The number of LSGs that fit each evolutionary scenario tested, plus the number of LSGs without elucidated origins. Support for gene model expression provided by an EST or cDNA consistent with the of gene model (as listed by TAIR). Support of expression at the locus provided by EST, cDNA or microarray probeset (TAIR and Ath1 affymetrix microarray).
Arabidopsis Cebennensis, supplied by Schmid GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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population genetics and structure of a global foxtail millet germplasm collection  (PopulationGenetics)
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PopulationGenetics population genetics and structure of a global foxtail millet germplasm collection
Summary of evidence for evolutionary origins of <t>Arabidopsis</t> thaliana lineage-specific genes . The number of LSGs that fit each evolutionary scenario tested, plus the number of LSGs without elucidated origins. Support for gene model expression provided by an EST or cDNA consistent with the of gene model (as listed by TAIR). Support of expression at the locus provided by EST, cDNA or microarray probeset (TAIR and Ath1 affymetrix microarray).
Population Genetics And Structure Of A Global Foxtail Millet Germplasm Collection, supplied by PopulationGenetics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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population genetics of vernal pools plants  (PopulationGenetics)
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PopulationGenetics population genetics of vernal pools plants
Summary of evidence for evolutionary origins of <t>Arabidopsis</t> thaliana lineage-specific genes . The number of LSGs that fit each evolutionary scenario tested, plus the number of LSGs without elucidated origins. Support for gene model expression provided by an EST or cDNA consistent with the of gene model (as listed by TAIR). Support of expression at the locus provided by EST, cDNA or microarray probeset (TAIR and Ath1 affymetrix microarray).
Population Genetics Of Vernal Pools Plants, supplied by PopulationGenetics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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population genomic analysis  (PopulationGenetics)
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PopulationGenetics population genomic analysis
Summary of evidence for evolutionary origins of <t>Arabidopsis</t> thaliana lineage-specific genes . The number of LSGs that fit each evolutionary scenario tested, plus the number of LSGs without elucidated origins. Support for gene model expression provided by an EST or cDNA consistent with the of gene model (as listed by TAIR). Support of expression at the locus provided by EST, cDNA or microarray probeset (TAIR and Ath1 affymetrix microarray).
Population Genomic Analysis, supplied by PopulationGenetics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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456 fungi  (PopulationGenetics)
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Summary of evidence for evolutionary origins of <t>Arabidopsis</t> thaliana lineage-specific genes . The number of LSGs that fit each evolutionary scenario tested, plus the number of LSGs without elucidated origins. Support for gene model expression provided by an EST or cDNA consistent with the of gene model (as listed by TAIR). Support of expression at the locus provided by EST, cDNA or microarray probeset (TAIR and Ath1 affymetrix microarray).
456 Fungi, supplied by PopulationGenetics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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aphis aurantii  (PopulationGenetics)
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PopulationGenetics aphis aurantii
Summary of evidence for evolutionary origins of <t>Arabidopsis</t> thaliana lineage-specific genes . The number of LSGs that fit each evolutionary scenario tested, plus the number of LSGs without elucidated origins. Support for gene model expression provided by an EST or cDNA consistent with the of gene model (as listed by TAIR). Support of expression at the locus provided by EST, cDNA or microarray probeset (TAIR and Ath1 affymetrix microarray).
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electrophoretic markers  (PopulationGenetics)
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PopulationGenetics electrophoretic markers
Summary of evidence for evolutionary origins of <t>Arabidopsis</t> thaliana lineage-specific genes . The number of LSGs that fit each evolutionary scenario tested, plus the number of LSGs without elucidated origins. Support for gene model expression provided by an EST or cDNA consistent with the of gene model (as listed by TAIR). Support of expression at the locus provided by EST, cDNA or microarray probeset (TAIR and Ath1 affymetrix microarray).
Electrophoretic Markers, supplied by PopulationGenetics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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spinach plant ncimb 42608 seed  (NCIMB Ltd)
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Summary of evidence for evolutionary origins of <t>Arabidopsis</t> thaliana lineage-specific genes . The number of LSGs that fit each evolutionary scenario tested, plus the number of LSGs without elucidated origins. Support for gene model expression provided by an EST or cDNA consistent with the of gene model (as listed by TAIR). Support of expression at the locus provided by EST, cDNA or microarray probeset (TAIR and Ath1 affymetrix microarray).
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Image Search Results


Summary of evidence for evolutionary origins of Arabidopsis thaliana lineage-specific genes . The number of LSGs that fit each evolutionary scenario tested, plus the number of LSGs without elucidated origins. Support for gene model expression provided by an EST or cDNA consistent with the of gene model (as listed by TAIR). Support of expression at the locus provided by EST, cDNA or microarray probeset (TAIR and Ath1 affymetrix microarray).

Journal: BMC Evolutionary Biology

Article Title: Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana

doi: 10.1186/1471-2148-11-47

Figure Lengend Snippet: Summary of evidence for evolutionary origins of Arabidopsis thaliana lineage-specific genes . The number of LSGs that fit each evolutionary scenario tested, plus the number of LSGs without elucidated origins. Support for gene model expression provided by an EST or cDNA consistent with the of gene model (as listed by TAIR). Support of expression at the locus provided by EST, cDNA or microarray probeset (TAIR and Ath1 affymetrix microarray).

Article Snippet: Different accessions from three Arabidopsis sp. were used; Arabidopsis thaliana accessions- N22614 (CVI-0), N22621 (CS22491), N22630 (Ag-0), N22633 (Bay-0), N22639 (Kas-1), N22643 (NOK-3), N22647 (TS-1), N22658 (OY-0), CS1642 (Ler-1), Got-7 (CS22283) and CS1028 (Bur-0) (obtained from Nottingham Arabidopsis Stock Centre); Arabidopsis lyrata petreae accessions- NT12b (8-3), Tannenberg T1a (15-1), random T14 (17-7), random T25 (13-4) and random spiterstulen (11-2) and Arabidopsis cebennensis (obtained from Prof. Karl Schmid, Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, Germany).

Techniques: Expressing, Microarray

Distribution of percentage coverage for LSG CDS vs. Arabidopsis lyrata intergenic region alignments . Where percentage coverage is greater than 100% indicates a gap in the alignment in the LSG, indicating an indel in the LSG in Arabidopsis thaliana .

Journal: BMC Evolutionary Biology

Article Title: Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana

doi: 10.1186/1471-2148-11-47

Figure Lengend Snippet: Distribution of percentage coverage for LSG CDS vs. Arabidopsis lyrata intergenic region alignments . Where percentage coverage is greater than 100% indicates a gap in the alignment in the LSG, indicating an indel in the LSG in Arabidopsis thaliana .

Article Snippet: Different accessions from three Arabidopsis sp. were used; Arabidopsis thaliana accessions- N22614 (CVI-0), N22621 (CS22491), N22630 (Ag-0), N22633 (Bay-0), N22639 (Kas-1), N22643 (NOK-3), N22647 (TS-1), N22658 (OY-0), CS1642 (Ler-1), Got-7 (CS22283) and CS1028 (Bur-0) (obtained from Nottingham Arabidopsis Stock Centre); Arabidopsis lyrata petreae accessions- NT12b (8-3), Tannenberg T1a (15-1), random T14 (17-7), random T25 (13-4) and random spiterstulen (11-2) and Arabidopsis cebennensis (obtained from Prof. Karl Schmid, Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, Germany).

Techniques:

Polymorphic LSGs resulting in interruption of the open reading frame.

Journal: BMC Evolutionary Biology

Article Title: Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana

doi: 10.1186/1471-2148-11-47

Figure Lengend Snippet: Polymorphic LSGs resulting in interruption of the open reading frame.

Article Snippet: Different accessions from three Arabidopsis sp. were used; Arabidopsis thaliana accessions- N22614 (CVI-0), N22621 (CS22491), N22630 (Ag-0), N22633 (Bay-0), N22639 (Kas-1), N22643 (NOK-3), N22647 (TS-1), N22658 (OY-0), CS1642 (Ler-1), Got-7 (CS22283) and CS1028 (Bur-0) (obtained from Nottingham Arabidopsis Stock Centre); Arabidopsis lyrata petreae accessions- NT12b (8-3), Tannenberg T1a (15-1), random T14 (17-7), random T25 (13-4) and random spiterstulen (11-2) and Arabidopsis cebennensis (obtained from Prof. Karl Schmid, Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, Germany).

Techniques:

Distribution of SNPs causing interruptions to the ORFs of LSGs in various Arabidopsis thaliana accessions . Predicted SNPs predicted by Perlegen re-sequencing data sets that cause the interruption of an LSG ORF. Left hand axis: lists the gene model and the SNP name. Left hand column: Lists the reference nucleotide found in the Columbia accession (Col-0). Main body of table: SNPs causing a missing of a start codon (MSC) are coloured orange. SNPs causing an internal stop codon (ISC) are coloured green. Missing data (i.e. when the nucleotide is undetermined at that position) coloured gray. Only SNPs causing ISC or MSC are annotated. Bottom axis: lists the accessions tested, they are divided by broad geographical distinctions; i.e. red = Northern Europe, blue = Central Europe, purple = Mediterranean, orange = British Isles, yellow = Central Asia, brown = Japan, pink = North America and gray = Cape Verde Islands. Right hand columns: First column represents the SNP data at the position for the intergenic alignment between the LSGs and intergenic regions in Arabidopsis lyrata . SNP types marked the same as the main table with the addition of an

Journal: BMC Evolutionary Biology

Article Title: Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana

doi: 10.1186/1471-2148-11-47

Figure Lengend Snippet: Distribution of SNPs causing interruptions to the ORFs of LSGs in various Arabidopsis thaliana accessions . Predicted SNPs predicted by Perlegen re-sequencing data sets that cause the interruption of an LSG ORF. Left hand axis: lists the gene model and the SNP name. Left hand column: Lists the reference nucleotide found in the Columbia accession (Col-0). Main body of table: SNPs causing a missing of a start codon (MSC) are coloured orange. SNPs causing an internal stop codon (ISC) are coloured green. Missing data (i.e. when the nucleotide is undetermined at that position) coloured gray. Only SNPs causing ISC or MSC are annotated. Bottom axis: lists the accessions tested, they are divided by broad geographical distinctions; i.e. red = Northern Europe, blue = Central Europe, purple = Mediterranean, orange = British Isles, yellow = Central Asia, brown = Japan, pink = North America and gray = Cape Verde Islands. Right hand columns: First column represents the SNP data at the position for the intergenic alignment between the LSGs and intergenic regions in Arabidopsis lyrata . SNP types marked the same as the main table with the addition of an "X" representing those instances were no alignment was identified in Arabidopsis lyrata . The second column represent the total number of ISC and indels found in the aligned Arabidopsis lyrata sequence. The final column represents the proportion of the LSG that is covered by the Arabidopsis lyrata alignment.

Article Snippet: Different accessions from three Arabidopsis sp. were used; Arabidopsis thaliana accessions- N22614 (CVI-0), N22621 (CS22491), N22630 (Ag-0), N22633 (Bay-0), N22639 (Kas-1), N22643 (NOK-3), N22647 (TS-1), N22658 (OY-0), CS1642 (Ler-1), Got-7 (CS22283) and CS1028 (Bur-0) (obtained from Nottingham Arabidopsis Stock Centre); Arabidopsis lyrata petreae accessions- NT12b (8-3), Tannenberg T1a (15-1), random T14 (17-7), random T25 (13-4) and random spiterstulen (11-2) and Arabidopsis cebennensis (obtained from Prof. Karl Schmid, Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, Germany).

Techniques: Sequencing, Northern Blot